Detailed information of SNP:
|
SNP ID:
sf0406850421(Gbrowse)
Chromosome: chr04 Position: 6850421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 58.97% | 41.03% |
| All Indica | 770 | 34.94% | 65.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 362 | 23.20% | 76.80% |
| Indica II | 204 | 32.84% | 67.16% |
| Indica Intermediate | 204 | 57.84% | 42.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406850421 | G->A | INTERGENIC | None |