Detailed information of SNP:
|
SNP ID:
sf0406852962(Gbrowse)
Chromosome: chr04 Position: 6852962 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 63.82% | 36.18% |
| All Indica | 790 | 96.84% | 3.16% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406852962 | A->T | INTERGENIC | None |