Detailed information of SNP:
|
SNP ID:
sf0406854237(Gbrowse)
Chromosome: chr04 Position: 6854237 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 74.58% | 25.42% |
| All Indica | 796 | 68.34% | 31.66% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406854237 | T->C | LOC_Os04g12420(LOC_Os04g12420.1) | Non-Synonymous SNP |