Detailed information of SNP:
|
SNP ID:
sf0406856095(Gbrowse)
Chromosome: chr04 Position: 6856095 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 51.46% | 48.54% |
| All Indica | 792 | 27.15% | 72.85% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 208 | 25.00% | 75.00% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406856095 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | INTRON |