Detailed information of SNP:
|
SNP ID:
sf0406856311(Gbrowse)
Chromosome: chr04 Position: 6856311 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 53.21% | 46.79% |
| All Indica | 775 | 79.10% | 20.90% |
| All Japonica | 493 | 6.69% | 93.31% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 364 | 88.19% | 11.81% |
| Indica II | 205 | 80.98% | 19.02% |
| Indica Intermediate | 206 | 61.17% | 38.83% |
| Temperate Japonica | 332 | 5.12% | 94.88% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406856311 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | INTRON |