Detailed information of SNP:
|
SNP ID:
sf0406856809(Gbrowse)
Chromosome: chr04 Position: 6856809 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 61.24% | 38.76% |
| All Indica | 783 | 92.98% | 7.02% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 366 | 94.26% | 5.74% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406856809 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | INTRON |