Detailed information of SNP:
|
SNP ID:
sf0406857324(Gbrowse)
Chromosome: chr04 Position: 6857324 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 53.92% | 46.08% |
| All Indica | 786 | 27.74% | 72.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 371 | 16.17% | 83.83% |
| Indica II | 208 | 26.92% | 73.08% |
| Indica Intermediate | 207 | 49.28% | 50.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406857324 | G->A | LOC_Os04g12420(LOC_Os04g12420.1) | INTRON |