Detailed information of SNP:
|
SNP ID:
sf0406857738(Gbrowse)
Chromosome: chr04 Position: 6857738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 53.71% | 46.29% |
| All Indica | 785 | 27.13% | 72.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 371 | 15.90% | 84.10% |
| Indica II | 206 | 25.24% | 74.76% |
| Indica Intermediate | 208 | 49.04% | 50.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406857738 | G->A | LOC_Os04g12420(LOC_Os04g12420.1) | Synonymous |