Detailed information of SNP:
|
SNP ID:
sf0406857823(Gbrowse)
Chromosome: chr04 Position: 6857823 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 55.53% | 44.47% |
| All Indica | 784 | 30.61% | 69.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 369 | 22.49% | 77.51% |
| Indica II | 207 | 25.60% | 74.40% |
| Indica Intermediate | 208 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406857823 | G->A | LOC_Os04g12420(LOC_Os04g12420.1) | Non-Synonymous SNP |