Detailed information of SNP:
|
SNP ID:
sf0406857884(Gbrowse)
Chromosome: chr04 Position: 6857884 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 50.07% | 49.93% |
| All Indica | 780 | 75.00% | 25.00% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 368 | 86.14% | 13.86% |
| Indica II | 209 | 76.08% | 23.92% |
| Indica Intermediate | 203 | 53.69% | 46.31% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406857884 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | Non-Synonymous SNP |