Detailed information of SNP:
|
SNP ID:
sf0406857891(Gbrowse)
Chromosome: chr04 Position: 6857891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 51.99% | 48.01% |
| All Indica | 791 | 27.81% | 72.19% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 373 | 15.82% | 84.18% |
| Indica II | 209 | 26.79% | 73.21% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406857891 | C->T | LOC_Os04g12420(LOC_Os04g12420.1) | Synonymous |