Detailed information of SNP:
|
SNP ID:
sf0406858063(Gbrowse)
Chromosome: chr04 Position: 6858063 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 54.04% | 45.96% |
| All Indica | 784 | 27.93% | 72.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 372 | 16.67% | 83.33% |
| Indica II | 206 | 25.24% | 74.76% |
| Indica Intermediate | 206 | 50.97% | 49.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406858063 | C->T | LOC_Os04g12420(LOC_Os04g12420.1) | Non-Synonymous SNP |