Detailed information of SNP:
|
SNP ID:
sf0406858809(Gbrowse)
Chromosome: chr04 Position: 6858809 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 50.82% | 49.18% |
| All Indica | 786 | 23.79% | 76.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 369 | 11.92% | 88.08% |
| Indica II | 209 | 22.01% | 77.99% |
| Indica Intermediate | 208 | 46.63% | 53.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406858809 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | Synonymous |