Detailed information of SNP:
|
SNP ID:
sf0406858810(Gbrowse)
Chromosome: chr04 Position: 6858810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 50.07% | 49.93% |
| All Indica | 783 | 75.10% | 24.90% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 368 | 86.14% | 13.86% |
| Indica II | 207 | 76.33% | 23.67% |
| Indica Intermediate | 208 | 54.33% | 45.67% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406858810 | A->G | LOC_Os04g12420(LOC_Os04g12420.1) | Non-Synonymous SNP |