Detailed information of SNP:
|
SNP ID:
sf0406859677(Gbrowse)
Chromosome: chr04 Position: 6859677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 55.40% | 44.60% |
| All Indica | 792 | 29.92% | 70.08% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 207 | 53.62% | 46.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406859677 | C->T | INTERGENIC | None |