Detailed information of SNP:
|
SNP ID:
sf0406859905(Gbrowse)
Chromosome: chr04 Position: 6859905 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 54.79% | 45.21% |
| All Indica | 791 | 28.82% | 71.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 373 | 16.62% | 83.38% |
| Indica II | 209 | 27.75% | 72.25% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406859905 | G->A | INTERGENIC | None |