Detailed information of SNP:
|
SNP ID:
sf0406859976(Gbrowse)
Chromosome: chr04 Position: 6859976 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 53.46% | 46.54% |
| All Indica | 789 | 27.88% | 72.12% |
| All Japonica | 479 | 99.16% | 0.84% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 371 | 15.90% | 84.10% |
| Indica II | 209 | 27.27% | 72.73% |
| Indica Intermediate | 209 | 49.76% | 50.24% |
| Temperate Japonica | 323 | 99.69% | 0.31% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406859976 | T->C | INTERGENIC | None |