Detailed information of SNP:
|
SNP ID:
sf0406860834(Gbrowse)
Chromosome: chr04 Position: 6860834 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 65.07% | 34.93% |
| All Indica | 787 | 98.48% | 1.52% |
| All Japonica | 495 | 7.68% | 92.32% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406860834 | A->G | INTERGENIC | None |