Detailed information of SNP:
|
SNP ID:
sf0406864064(Gbrowse)
Chromosome: chr04 Position: 6864064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.93% | 45.07% |
| All Indica | 792 | 29.17% | 70.83% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 373 | 17.96% | 82.04% |
| Indica II | 212 | 26.89% | 73.11% |
| Indica Intermediate | 207 | 51.69% | 48.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406864064 | G->A | INTERGENIC | None |