Detailed information of SNP:
|
SNP ID:
sf0406864726(Gbrowse)
Chromosome: chr04 Position: 6864726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 55.69% | 44.31% |
| All Indica | 788 | 30.08% | 69.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 368 | 19.02% | 80.98% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406864726 | C->T | INTERGENIC | None |