Detailed information of SNP:
|
SNP ID:
sf0406865227(Gbrowse)
Chromosome: chr04 Position: 6865227 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 56.64% | 43.36% |
| All Indica | 792 | 31.94% | 68.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 370 | 20.00% | 80.00% |
| Indica II | 212 | 29.25% | 70.75% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406865227 | A->G | LOC_Os04g12430(LOC_Os04g12430.1) | SNPs that introduce initiation codons |