Detailed information of SNP:
|
SNP ID:
sf0406866746(Gbrowse)
Chromosome: chr04 Position: 6866746 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 53.73% | 46.27% |
| All Indica | 788 | 29.57% | 70.43% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 371 | 16.98% | 83.02% |
| Indica II | 211 | 28.91% | 71.09% |
| Indica Intermediate | 206 | 52.91% | 47.09% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406866746 | A->G | LOC_Os04g12430(LOC_Os04g12430.1) | UTR_5_PRIME |