Detailed information of SNP:
|
SNP ID:
sf0406866874(Gbrowse)
Chromosome: chr04 Position: 6866874 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.17% | 42.83% |
| All Indica | 796 | 32.66% | 67.34% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 373 | 19.84% | 80.16% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406866874 | G->T | LOC_Os04g12430(LOC_Os04g12430.1) | UTR_5_PRIME |