Detailed information of SNP:
|
SNP ID:
sf0406867300(Gbrowse)
Chromosome: chr04 Position: 6867300 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 56.67% | 43.33% |
| All Indica | 792 | 31.82% | 68.18% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 371 | 18.87% | 81.13% |
| Indica II | 212 | 29.72% | 70.28% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406867300 | G->A | LOC_Os04g12430(LOC_Os04g12430.1) | Non-Synonymous SNP |