Detailed information of SNP:
|
SNP ID:
sf0406873135(Gbrowse)
Chromosome: chr04 Position: 6873135 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 59.14% | 40.86% |
| All Indica | 780 | 35.51% | 64.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 369 | 21.41% | 78.59% |
| Indica II | 203 | 33.00% | 67.00% |
| Indica Intermediate | 208 | 62.98% | 37.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406873135 | A->T | LOC_Os04g12440(LOC_Os04g12440.1) | INTRON |