Detailed information of SNP:
|
SNP ID:
sf0406873380(Gbrowse)
Chromosome: chr04 Position: 6873380 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 85.50% | 14.50% |
| All Indica | 782 | 79.41% | 20.59% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 90.24% | 9.76% |
| Indica II | 208 | 83.65% | 16.35% |
| Indica Intermediate | 205 | 55.61% | 44.39% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406873380 | A->G | LOC_Os04g12440(LOC_Os04g12440.1) | INTRON |