Detailed information of SNP:
|
SNP ID:
sf0406876039(Gbrowse)
Chromosome: chr04 Position: 6876039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 94.61% | 5.39% |
| All Indica | 773 | 92.63% | 7.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 365 | 90.14% | 9.86% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406876039 | C->T | INTERGENIC | None |