Detailed information of SNP:
|
SNP ID:
sf0406878669(Gbrowse)
Chromosome: chr04 Position: 6878669 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 89.43% | 10.57% |
| All Indica | 778 | 83.93% | 16.07% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 93.72% | 6.28% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 204 | 63.73% | 36.27% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406878669 | A->G | INTERGENIC | None |