Detailed information of SNP:
|
SNP ID:
sf0406878798(Gbrowse)
Chromosome: chr04 Position: 6878798 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 86.74% | 13.26% |
| All Indica | 743 | 80.62% | 19.38% |
| All Japonica | 481 | 96.47% | 3.53% |
| Aus | 54 | 85.19% | 14.81% |
| Indica I | 366 | 90.98% | 9.02% |
| Indica II | 196 | 80.61% | 19.39% |
| Indica Intermediate | 181 | 59.67% | 40.33% |
| Temperate Japonica | 325 | 95.38% | 4.62% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406878798 | T->C | INTERGENIC | None |