Detailed information of SNP:
|
SNP ID:
sf0406881355(Gbrowse)
Chromosome: chr04 Position: 6881355 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 85.33% | 14.67% |
| All Indica | 774 | 78.55% | 21.45% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 363 | 89.26% | 10.74% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 204 | 57.35% | 42.65% |
| Temperate Japonica | 333 | 93.39% | 6.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406881355 | T->C | INTERGENIC | None |