Detailed information of SNP:
|
SNP ID:
sf0406883778(Gbrowse)
Chromosome: chr04 Position: 6883778 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 58.43% | 41.57% |
| All Indica | 793 | 34.93% | 65.07% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 373 | 21.72% | 78.28% |
| Indica II | 212 | 35.85% | 64.15% |
| Indica Intermediate | 208 | 57.69% | 42.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406883778 | T->C | INTERGENIC | None |