Detailed information of SNP:
|
SNP ID:
sf0406884042(Gbrowse)
Chromosome: chr04 Position: 6884042 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 57.68% | 42.32% |
| All Indica | 793 | 33.80% | 66.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 373 | 21.45% | 78.55% |
| Indica II | 210 | 33.33% | 66.67% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406884042 | G->A | INTERGENIC | None |