Detailed information of SNP:



SNP ID: sf0406906103(Gbrowse)

Chromosome: chr04

Position: 6906103
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 96.12% 3.88%
All Indica799 99.75% 0.25%
All Japonica494 90.08% 9.92%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 98.80% 1.20%
Tropical Japonica92 57.61% 42.39%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0406906103 G->A LOC_Os04g12490(LOC_Os04g12490.1) Synonymous