Detailed information of SNP:
|
SNP ID:
sf0406939331(Gbrowse)
Chromosome: chr04 Position: 6939331 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406939331 | G->A | INTERGENIC | None |