Detailed information of SNP:
|
SNP ID:
sf0406939660(Gbrowse)
Chromosome: chr04 Position: 6939660 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 50.76% | 49.24% |
| All Indica | 771 | 86.90% | 13.10% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 64 | 21.88% | 78.12% |
| Indica I | 361 | 90.03% | 9.97% |
| Indica II | 205 | 83.90% | 16.10% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406939660 | G->A | INTERGENIC | None |