Detailed information of SNP:
|
SNP ID:
sf0406939746(Gbrowse)
Chromosome: chr04 Position: 6939746 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 53.73% | 46.27% |
| All Indica | 774 | 91.21% | 8.79% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 355 | 95.49% | 4.51% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406939746 | A->G | INTERGENIC | None |