Detailed information of SNP:
|
SNP ID:
sf0406939922(Gbrowse)
Chromosome: chr04 Position: 6939922 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 53.60% | 46.40% |
| All Indica | 782 | 90.92% | 9.08% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 362 | 94.20% | 5.80% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406939922 | A->G | INTERGENIC | None |