Detailed information of SNP:
|
SNP ID:
sf0406940053(Gbrowse)
Chromosome: chr04 Position: 6940053 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 51.60% | 48.40% |
| All Indica | 786 | 87.40% | 12.60% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 367 | 89.37% | 10.63% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406940053 | T->C | INTERGENIC | None |