Detailed information of SNP:
|
SNP ID:
sf0406942227(Gbrowse)
Chromosome: chr04 Position: 6942227 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 96.29% | 3.71% |
| All Indica | 783 | 94.00% | 6.00% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 89.92% | 10.08% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406942227 | T->C | INTERGENIC | None |