Detailed information of SNP:
|
SNP ID:
sf0406943536(Gbrowse)
Chromosome: chr04 Position: 6943536 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 55.62% | 44.38% |
| All Indica | 787 | 94.28% | 5.72% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406943536 | C->T | INTERGENIC | None |