Detailed information of SNP:
|
SNP ID:
sf0406943627(Gbrowse)
Chromosome: chr04 Position: 6943627 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 55.78% | 44.22% |
| All Indica | 789 | 94.30% | 5.70% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406943627 | C->T | INTERGENIC | None |