Detailed information of SNP:
|
SNP ID:
sf0406943667(Gbrowse)
Chromosome: chr04 Position: 6943667 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406943667 | G->A | INTERGENIC | None |