Detailed information of SNP:
|
SNP ID:
sf0406943999(Gbrowse)
Chromosome: chr04 Position: 6943999 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 53.28% | 46.72% |
| All Indica | 785 | 90.32% | 9.68% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 365 | 93.15% | 6.85% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406943999 | T->C | INTERGENIC | None |