Detailed information of SNP:
|
SNP ID:
sf0406945815(Gbrowse)
Chromosome: chr04 Position: 6945815 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 77.75% | 22.25% |
| All Indica | 791 | 85.59% | 14.41% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 204 | 65.69% | 34.31% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406945815 | A->G | INTERGENIC | None |