Detailed information of SNP:
|
SNP ID:
sf0406956082(Gbrowse)
Chromosome: chr04 Position: 6956082 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 73.64% | 26.36% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 62.37% | 37.63% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406956082 | G->A | INTERGENIC | None |