Detailed information of SNP:
|
SNP ID:
sf0406956451(Gbrowse)
Chromosome: chr04 Position: 6956451 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 80.06% | 19.94% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406956451 | C->G | INTERGENIC | None |