Detailed information of SNP:
|
SNP ID:
sf0406977656(Gbrowse)
Chromosome: chr04 Position: 6977656 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 82.54% | 17.46% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 469 | 51.39% | 48.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 49.06% | 50.94% |
| Tropical Japonica | 86 | 82.56% | 17.44% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406977656 | T->C | INTERGENIC | None |