Detailed information of SNP:
|
SNP ID:
sf0406982370(Gbrowse)
Chromosome: chr04 Position: 6982370 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.58% | 9.42% |
| All Indica | 794 | 89.80% | 10.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 207 | 72.95% | 27.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406982370 | C->A | LOC_Os04g12610(LOC_Os04g12610.1) | INTRON |