Detailed information of SNP:
|
SNP ID:
sf0406982417(Gbrowse)
Chromosome: chr04 Position: 6982417 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.54% | 8.46% |
| All Indica | 790 | 90.89% | 9.11% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 204 | 76.96% | 23.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406982417 | A->T | LOC_Os04g12610(LOC_Os04g12610.1) | INTRON |