Detailed information of SNP:
|
SNP ID:
sf0406989393(Gbrowse)
Chromosome: chr04 Position: 6989393 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 88.43% | 11.57% |
| All Indica | 798 | 86.47% | 13.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406989393 | C->T | INTERGENIC | None |